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References to publications, sorted by year and author.

Steele, JA, Countway, PD, Xia, L, Vigil, PD, Beman, JM, Kim, DY, Chow, CT, Sachdeva, R, Jones, AC, Schwalbach, MS, Rose, JM, Hewson, I, Patel, A, Sun, F, Caron, DA, and Fuhrman, JA (2011).
Marine bacterial, archaeal and protistan association networks reveal ecological linkages
ISME Journal, 5:1414–1425.

Xia, LC, Cram, JA, Chen, T, Fuhrman, JA, and Sun, F (2011).
Accurate genome relative abundance estimation based on shotgun metagenomic reads
PLoS One(accepted).

Xia, LC, Steele, JA, Cram, JA, Cardon, ZG, Simmons, SL, Vallino, JJ, Fuhrman, JA, and Sun, F (2011).
Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates
BMC Systems Biology, 5(Suppl 2):S15.